Rapid Identification of Aspergillus Fumigatus Using Î’eta-Tubulin and RodletA Genes
DOI:
https://doi.org/10.3889/oamjms.2017.203Keywords:
β-tubulin, rodletA, Aspergillus fumigatusAbstract
AIM: The main purpose of the present study was to test the β-tubulin and rodletA genes for rapid identification of Aspergillus fumigatus.
MATERIALS AND METHODS: Fifty-one A. fumigatus strains including environmental, clinical and reference isolates were tested in this research. PCR was carried out based on βtub and rodA partial gene sequences.
RESULTS: A 198 bp DNA fragment was obtained using βtub gene. PCR amplification of the rodA gene resulted in a 313 bp band. The βtub and rodA genes PCR products exhibited a 100% homology with the associated sequences in the GenBank.
CONCLUSION: In the present study, we used a PCR approach that was able to discriminate A. fumigatus from other related species within the section Fumigati.Downloads
Metrics
Plum Analytics Artifact Widget Block
References
Brown GD, Denning DW, Gow NA, Levitz SM, Netea MG, White TC. Hidden killers: human fungal infections. Sci Transl Med. 2012; 4(165):165rv13. https://doi.org/10.1126/scitranslmed.3004404 PMCid:PMC3627207
Samson RA, Hong SB, Frisvad JC. 2006. Old and new concepts of species differentiation in Aspergillus. Med Mycol. 2006; 44:S133-48. https://doi.org/10.1080/13693780600913224
Brakhage AA, Langfelder K. Menacing mold: the molecular biology of Aspergillus fumigatus. Annu Rev Microbiol. 2002; 56:533–455. https://doi.org/10.1146/annurev.micro.56.012302.160625 PMid:12142473
Frisvad JC, Larsen TO. Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati. Front Microbiol. 2016; 6:1485. https://doi.org/10.3389/fmicb.2015.01485 PMid:26779142 PMCid:PMC4703822
Lamoth F. Aspergillus fumigatus-Related Species in Clinical Practice. Front Microbiol. 2016;7:683. https://doi.org/10.3389/fmicb.2016.00683 PMid:27242710 PMCid:PMC4868848
Cole RJ, Cox RH. Handbook of toxic fungal metabolites. Academic, New York, 1981.
Larsen TO, Smedsgaard J, Nielsen KF, Hansen MA, Samson RA, Frisvad JC. Production of mycotoxins by Aspergillus lentulus and other medically important and closely related species in section Fumigati. Med Mycol. 2007;45(3):225-32. https://doi.org/10.1080/13693780601185939 PMid:17464844
Balajee SA, Nickle D, Varga J, Marr KA. Molecular studies reveal frequent misidentification of Aspergillus fumigatus by morphotyping. Eukaryot Cell. 2006 5(10):1705-12. https://doi.org/10.1128/EC.00162-06 PMid:17030996 PMCid:PMC1595351
Hong SB, Shin HD, Hong J, Frisvad JC, Nielsen PV, Varga J, Samson RA. New taxa of Neosartorya and Aspergillus in Aspergillus section Fumigati. Antonie Van Leeuwenhoek. 2008;93(1-2):87-98. https://doi.org/10.1007/s10482-007-9183-1 PMid:17610141 PMCid:PMC2140094
Samson R A , Hong S , Peterson S W , Frisvad J C, Varga. Polyphasic taxonomy of Aspergillus section Fumigati and its teleomorph Neosartorya. Stud Mycol. 2007; 59: 147–203. https://doi.org/10.3114/sim.2007.59.14 PMid:18490953 PMCid:PMC2275200
Balajee SA, Houbraken J, Verweij PE, Hong SB, Yaghuchi T, Varga J, Samson RA.Aspergillus species identification in the clinical setting. Stud Mycol. 2007; 59: 39–46. https://doi.org/10.3114/sim.2007.59.05 PMid:18490954 PMCid:PMC2275201
Hong SB, Go SJ, Shin HD, Frisvad JC, Samson RA. Polyphasic taxonomy of Aspergillus fumigatus and related species. Mycologia. 2005;97(6):1316-29. https://doi.org/10.1080/15572536.2006.11832738 PMid:16722222
Wang L, Yokoyama K, Miyaji M, Nishimura K. Mitochondrial cytochrome b gene analysis of Aspergillus fumigatus and related species. J Clin Microbiol. 2000;38(4):1352-8. PMid:10747106 PMCid:PMC86444
Ricardo Araujo, António Amorim, Leonor Gusmão. Diversity and specificity of microsatellites within Aspergillus section Fumigati. BMC Microbiol. 2012; 12: 154. https://doi.org/10.1186/1471-2180-12-154 PMid:22838495 PMCid:PMC3438126
Etienne KA, Gade L, Lockhart SR, Diekema DJ, Messer SA, Pfaller MA, Balajee SA. Screening of a Large Global Aspergillus fumigatus Species Complex Collection by Using a Species-Specific Microsphere-Based Luminex Assay. J Clin Microbiol. 2009; 47(12): 4171–4172. https://doi.org/10.1128/JCM.01415-09 PMid:19794043 PMCid:PMC2786642
Fernandez-Molina JV, Abad-Diaz-de-Cerio A, Sueiro-Olivares M, Pellon A, Ramirez-Garcia A, Garaizar J, Pemán J, Hernando FL, Rementeria A. Rapid and specific detection of section Fumigati and Aspergillus fumigatus in human samples using a new multiplex real-time PCR. Diagn Microbiol Infect Dis. 2014;80(2):111-8. https://doi.org/10.1016/j.diagmicrobio.2014.06.003 PMid:25063549
Burnie JP, Coke A, Matthews RC. Restriction endonuclease analysis of Aspergillus fumigatus DNA. J Clin Pathol. 1992; 45:324–327. https://doi.org/10.1136/jcp.45.4.324 PMid:1349614 PMCid:PMC495273
Downloads
Published
How to Cite
Issue
Section
License
http://creativecommons.org/licenses/by-nc/4.0