Comparison of Abbott ID NOW COVID-19 Rapid Molecular Assay to Allplex 2019-nCoV and VIASURE SARS-CoV-2 Detection in Nasal Swabs

Ghada Ismail; Dalia Abdelhamid; Rania Abdelhalim; Marwa Salah Mostafa; Hossam Abdelghaffar; Noha Alaa Eldin Fahim; Ahmed Elshafei; Nashwa Naguib

doi:10.3889/oamjms.2022.9776

Authors

Ghada Ismail Department of Clinical Pathology, Faculty of Medicine, Ain Shams University, Cairo, Egypt; Director of Reference Laboratory of the Egyptian University Hospitals, Egypt
Dalia Abdelhamid Department of Clinical Pathology, Faculty of Medicine, Ain Shams University, Cairo, Egypt
Rania Abdelhalim Department of Clinical Pathology, Faculty of Medicine, Ain Shams University, Cairo, Egypt
Marwa Salah Mostafa Department of Medical Microbiology and Immunology, Faculty of Medicine, Cairo University, Cairo, Egypt
Hossam Abdelghaffar Department of ENT, Faculty of Medicine, Helwan University, Egypt; Secretary General of the Supreme Council for University Hospitals, Ministry of Higher Education, Giza, Egypt
Noha Alaa Eldin Fahim Department of Clinical Pathology, Faculty of Medicine, Ain Shams University, Cairo, Egypt
Ahmed Elshafei Theodor Belharz Research Institute, Ministry of Higher Education and Scientific Research, Giza, Egypt
Nashwa Naguib Department of Clinical Pathology, Faculty of Medicine, Ain Shams University, Cairo, Egypt https://orcid.org/0000-0002-2607-2518

DOI:

https://doi.org/10.3889/oamjms.2022.9776

Keywords:

ID NOW, COVID-19, Allplex, VIASURE, SARS-CoV-2

Abstract

BACKGROUND: Readily available, accurate, and rapid diagnostic technologies are of high priority to contain emerging and re-emerging pandemics and to properly allocate personal protective equipment usage and preventing nosocomial spread with subsequent community transmission. Detection of positive 2019-nCoV nucleic acids by real-time reverse transcriptase-polymerase chain reaction (rRT-PCR)-based assays remains the gold standard for COVID-19 diagnostics. However, these assays take an average over 3–5 h to generate results and the PCR tests require certified laboratories, expensive equipment, and trained technicians to operate. Therefore, there is an urgent need for rapid point of care molecular tests that can be readily used in a healthcare setting that generates reliable results within few hours. Those tests should provide reliable results in the setting to facilitate the diagnosis and rapid decision-making.

AIM: The present study aimed to evaluate the diagnostic performance of Abbott ID NOW SARS-CoV-2 compared to two gold standard assays (Allplex 2019- nCoV and VIASURE SARS-CoV-2) and to detect the relation between viral load and the sensitivity of ID NOW SARS-CoV-2 assay.

METHODS: A total of 86 and 42 nasopharyngeal swabs collected from patients attending the Reference Laboratory of Egyptian University Hospitals during the period from January 2022 to May 2022, were tested by our reference methods of RT-PCR for COVID-19 detection; VIASURE kit and Allplex kits, respectively. Corresponding dry nasal swabs were collected from the same patients for ID NOW SARS-CoV-2 ribonucleic acid (RNA) detection assay.

RESULTS: As regards the results of the 86 nasopharyngeal swabs tested by both VIASURE kit and ID NOW, there was a good agreement between both methods (95%) (kappa = 0.924), where the ID NOW method was not able to detect three COVID-19-positive samples (3/86, 5.1%). ID NOW exhibited specificity and sensitivity of 100% and 94.9%, respectively. As for comparing results of ID NOW with Allplex kit, the results of the 42 nasopharyngeal swabs tested by both tests revealed good agreement between both methods (kappa = 0.908). In comparison with Allplex kit, ID NOW exhibited specificity and sensitivity of 90% and 100%, respectively. Regarding the relation between the viral load detected by VIASURE kit and results of the ID NOW test, we found that ID NOW showed a sensitivity of 82.35% in samples with low viral load (CT > 30), while for samples with intermediate (CT: 20–30) and high (CT < 20) viral loads, sensitivity was 100%.

CONCLUSION: ID NOW assay in our study exhibited a high diagnostic performance when evaluated with the gold standard RT-PCR methods. Our study further substantiates the high sensitivity of ID NOW in the presence of intermediate and high viral loads detected by molecular RT-PCR SARS-CoV-2 testing. Its analytical performances, combined with the very short 13 min reactional time and the friendly device-guided handling procedure, constitute an additional advantage of ID NOW COVID-19 for setting up a rapid diagnosis within the clinical laboratories and for timely identification of outbreaks allowing for aggressive contact tracing and containment.

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